Index

A

assign_standardized_meta() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

B

BBROWSER (bioturing_connector.typing.StudyType attribute) BBrowserXConnector (class in bioturing_connector.bbrowserx_connector) BCS (bioturing_connector.typing.StudyType attribute) bioturing_connector.bbrowserx_connector module

bioturing_connector.lens_bulk_connector module bioturing_connector.lens_sc_connector module bioturing_connector.typing module

C

CHUNK_100_MB (bioturing_connector.typing.ChunkSize attribute) CHUNK_1_GB (bioturing_connector.typing.ChunkSize attribute) CHUNK_500_MB (bioturing_connector.typing.ChunkSize attribute)

CHUNK_5_MB (bioturing_connector.typing.ChunkSize attribute) ChunkSize (class in bioturing_connector.typing) COSMX (bioturing_connector.typing.StudyType attribute)

D

DSP (bioturing_connector.typing.StudyType attribute) (bioturing_connector.typing.TechnologyType attribute)

G

get_all_studies_info_in_group() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) get_barcodes() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) get_features() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) get_metadata() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

get_ontologies_tree() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) get_shared_s3_of_group() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) get_user_groups() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) get_user_s3() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

H

H5_10X (bioturing_connector.typing.StudyType attribute)

H5AD (bioturing_connector.typing.StudyType attribute) HUMAN (bioturing_connector.typing.Species attribute)

I

InputMatrixType (class in bioturing_connector.typing)

L

LENS_SC (bioturing_connector.typing.TechnologyType attribute) LensBulkConnector (class in bioturing_connector.lens_bulk_connector) LensSCConnector (class in bioturing_connector.lens_sc_connector)

list_all_custom_embeddings() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

M

module bioturing_connector.bbrowserx_connector bioturing_connector.lens_bulk_connector bioturing_connector.lens_sc_connector bioturing_connector.typing

MOUSE (bioturing_connector.typing.Species attribute) MTX_10X (bioturing_connector.typing.StudyType attribute)

N

NON_HUMAN_PRIMATE (bioturing_connector.typing.Species attribute)

NORMALIZED (bioturing_connector.typing.InputMatrixType attribute)

O

OTHERS (bioturing_connector.typing.Species attribute)

P

PROTEOMICS (bioturing_connector.typing.TechnologyType attribute)

PROTEOMICS_OME_TIF (bioturing_connector.typing.StudyType attribute) PROTEOMICS_QPTIFF (bioturing_connector.typing.StudyType attribute)

Q

query_genes() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

R

RAW (bioturing_connector.typing.InputMatrixType attribute) RDS (bioturing_connector.typing.StudyType attribute)

retrieve_custom_embedding() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

S

SINGLE_CELL (bioturing_connector.typing.TechnologyType attribute) Species (class in bioturing_connector.typing) StudyType (class in bioturing_connector.typing) StudyUnit (class in bioturing_connector.typing) submit_metadata_from_dataframe() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_metadata_from_local() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_metadata_from_s3() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_metadata_from_shared_s3() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

submit_study_from_local() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) submit_study_from_local_lens_sc() (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_study_from_local_proteomics() (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_study_from_s3() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) submit_study_from_s3_lens_sc() (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_study_from_s3_proteomics() (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_study_from_shared_s3() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) submit_study_from_shared_s3_lens_sc() (bioturing_connector.lens_sc_connector.LensSCConnector method) submit_study_from_shared_s3_proteomics() (bioturing_connector.lens_sc_connector.LensSCConnector method)

T

TechnologyType (class in bioturing_connector.typing) test_connection() (bioturing_connector.bbrowserx_connector.BBrowserXConnector method) (bioturing_connector.lens_bulk_connector.LensBulkConnector method) (bioturing_connector.lens_sc_connector.LensSCConnector method)

TILE_DB (bioturing_connector.typing.StudyType attribute) TSV (bioturing_connector.typing.StudyType attribute)

U

UNIT_LOGNORM (bioturing_connector.typing.StudyUnit attribute)

UNIT_RAW (bioturing_connector.typing.StudyUnit attribute)

V

VISIUM (bioturing_connector.typing.StudyType attribute) (bioturing_connector.typing.TechnologyType attribute) VISIUM_ANN (bioturing_connector.typing.StudyType attribute)

VISIUM_RDS (bioturing_connector.typing.StudyType attribute) VIZGEN (bioturing_connector.typing.StudyType attribute) VIZGEN_V2 (bioturing_connector.typing.StudyType attribute)

X

XENIUM (bioturing_connector.typing.StudyType attribute)