bioturing_connector.typing package

Module contents

class bioturing_connector.typing.ChunkSize(value)[source]

Bases: Enum

An enumeration.

CHUNK_100_MB = 104857600

CHUNK_1_GB = 1073741824

CHUNK_500_MB = 524288000

CHUNK_5_MB = 5242880

class bioturing_connector.typing.InputMatrixType(value)[source]

Bases: Enum

An enumeration.

NORMALIZED = 'normalized'

RAW = 'raw'

class bioturing_connector.typing.Species(value)[source]

Bases: Enum

An enumeration.

HUMAN = 'human'

MOUSE = 'mouse'

NON_HUMAN_PRIMATE = 'primate'

OTHERS = 'others'

class bioturing_connector.typing.StudyType(value)[source]

Bases: Enum

An enumeration.

BBROWSER = 0

BCS = 4

COSMX = 10

DSP = 7

H5AD = 2

H5_10X = 1

MTX_10X = 3

PROTEOMICS_OME_TIF = 17

PROTEOMICS_QPTIFF = 16

RDS = 5

TILE_DB = 15

TSV = 6

VISIUM = 8

VISIUM_ANN = 13

VISIUM_RDS = 12

VIZGEN = 9

VIZGEN_V2 = 14

XENIUM = 11

class bioturing_connector.typing.StudyUnit(value)[source]

Bases: Enum

An enumeration.

UNIT_LOGNORM = 'lognorm'

UNIT_RAW = 'raw'

class bioturing_connector.typing.TechnologyType(value)[source]

Bases: Enum

An enumeration.

DSP = 'DSP'

LENS_SC = 'LENS_SC'

PROTEOMICS = 'PROTEOMICS'

SINGLE_CELL = 'SC'

VISIUM = 'VISIUM'